Read model outputs and format to AEME standard
Usage
read_model_outputs(
nc = NULL,
lake_dir,
model,
vars_sim = NULL,
depths = NULL,
dates = NULL,
date_index = NULL,
incl_fluxes = TRUE,
output_hour = 0,
phyto_pars = NULL
)Arguments
- nc
Open netCDF object. If NULL, will open netCDF from lake_dir. This is useful when reading multiple variables from the same file to avoid reopening the file multiple times. Defaults to NULL.
- lake_dir
Directory of lake model outputs
- model
Model name. One of "gotm_wet", "glm_aed", or "dy_cd".
- vars_sim
Variables to extract in the AEME format e.g. "HYD_temp"
- depths
Depths to extract. If NULL, extract all model layer depths. Defaults to NULL.
- dates
Dates to extract. If NULL, extract all dates. Defaults to NULL.
- date_index
Date index to extract. If NULL, extract all dates. Defaults to NULL.
- incl_fluxes
Logical indicating whether to include flux variables. Defaults to TRUE.
- output_hour
Hour of the day to extract (0-23). Defaults to 0.
- phyto_pars
Dataframe of phytoplankton parameters for GLM-AED model. See `?read_glm_output` for details. Defaults to NULL.