Read GLM netCDF output

Usage

read_glm_output(
  nc = NULL,
  vars_sim = NULL,
  depths = NULL,
  dates = NULL,
  date_index = NULL,
  incl_fluxes = TRUE,
  output_hour = 0,
  file,
  phyto_pars
)

Arguments

nc: An object of class ncdf4 (as returned by either function nc_open or function nc_create), indicating what file to read from.
vars_sim: Variables to extract in the AEME format e.g. "HYD_temp"
depths: Depths to extract. If NULL, extract all model layer depths. Defaults to NULL.
dates: Dates to extract. If NULL, extract all dates. Defaults to NULL.
date_index: Date index to extract. If NULL, extract all dates. Defaults to NULL.
incl_fluxes: Logical indicating whether to include flux variables. Defaults to TRUE.
output_hour: Hour of the day to extract (0-23). Defaults to 0.
file: File path to netCDF file. Only used if `nc` is NULL.
phyto_pars: Data frame with phytoplankton parameters from AED.

Value

List with AEME output variables