Load AEME output to the aeme object

Usage

load_output(
  aeme,
  model,
  path = NULL,
  lake_dir = NULL,
  model_controls,
  parallel = FALSE,
  cl = NULL,
  ens_n = 1,
  keep_diag = TRUE,
  extra_vars = NULL,
  sed_layers = NULL,
  zone_summary = FALSE
)

Arguments

aeme: Aeme object.
model: character vector; models to use. One or more of "dy_cd", "glm_aed", "gotm_wet", "simstrat_aed2". Defaults to all models if not found in aeme.
path: character; directory where input files are located. Defaults to the path stored in aeme, or the current working directory if not set.
lake_dir: Path to the lake AEME directory. If NULL, it is derived from aeme/path.
model_controls: data.frame; model configuration, typically loaded via get_model_controls().
parallel: logical; run models in parallel. Defaults to FALSE.
cl: an object of class "cluster".
ens_n: numeric; ensemble number to allocate to model output which is loaded. Defaults to 1.
keep_diag: logical; keep the diag (diagnostic/scalar) and sediment sub-lists of each model's output (variables with dimensions other than time or depth x time, keyed by raw model names). Default TRUE; set to FALSE to save memory.
extra_vars: character; for GLM-AED, which sediment, flux and diagnostic variables beyond the standard set to read from output.nc. NULL (default) reads all of them. "none" reads none. Otherwise AEME names from glm_extra_vars (e.g. "SED_temp"), raw netCDF names, and/or the keywords "sediment" / "diag". Unrequested variables are never read, which keeps ensemble output small. See read_glm_output().
sed_layers: integer; GLM-AED sediment layers to keep for variables with a sediment-layer dimension (SED_temp). NULL keeps all. See read_glm_output().
zone_summary: logical; for GLM-AED, also add an area-weighted lake-wide series for each requested sediment-zone variable. See read_glm_output(). Default FALSE.

Value

Updated aeme object with model output