Set the biogeochemical models to be used in a GLM-AED configuration file.
Usage
set_glm_aed_models(
aeme,
path,
aed_models = c("aed_sedflux", "aed_oxygen", "aed_silica", "aed_nitrogen",
"aed_phosphorus", "aed_organic_matter", "aed_phytoplankton", "aed_zooplankton",
"aed_macrophyte", "aed_totals"),
file = NULL,
nml = NULL
)Arguments
- aeme
aeme; object.
- path
filepath; where input files are located relative to the current working directory.
- aed_models
Character vector of GLM-AED models to include. Default includes all available AED models: "aed_sedflux", "aed_oxygen", "aed_silica", "aed_nitrogen", "aed_phosphorus", "aed_organic_matter", "aed_phytoplankton", "aed_zooplankton", and "aed_macrophyte".
- file
Path to the GLM-AED configuration file. If NULL, the function will attempt to locate the file based on the provided Aeme object and path.
- nml
GLM-AED nml object. If provided, the function will modify this object directly instead of reading from a file.