These functions provide a unified interface for running external hydrodynamic or biogeochemical lake models from within R. Each function moves into the appropriate simulation directory, executes the model's command-line binary, prints progress messages, and reports whether the model run completed successfully. The functions are intended to be called for their side effects: they do not return model results directly, but instead produce model output files in the simulation folder.
Usage
run_dy_cd(sim_folder, verbose = FALSE, debug = FALSE, timeout = Inf)
run_glm_aed(sim_folder, verbose = FALSE, debug = FALSE, timeout = Inf)
run_gotm_wet(sim_folder, verbose = FALSE, debug = FALSE, timeout = Inf)Arguments
- sim_folder
the directory where simulation files are contained
- verbose
Logical: Should output of model be shown
- debug
Logical; save debug file. DYRESM only.
- timeout
timeout in seconds, ignored if 0. This is a limit for the elapsed time running
commandin a separate process. Fractions of seconds are ignored.